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| Career Homeruns Allowed Leaderboard | |
| * - Indicates Hall of Fame Bold - Indicates active player |
| Rank | Player | Homeruns Allowed | IP | Years | Single Season Leaderboard |
| 1. | Lincoln Hoots | 432 | 2677.6 | 1976-1992 | |
| 2. | Tenchi Masaki | 417 | 2690.9 | 1977-1993 | |
| 3. | Ryan Dunne * | 382 | 3726.6 | 1973-1989 | |
| 4. | Jose Ramos | 377 | 3214.3 | 1978-1993 | |
| 5. | Hayden Finch | 376 | 2281.6 | 1983-1994 | |
| 6. | Chuck Schaller | 370 | 3137.9 | 1973-1988 | |
| 7. | Cesar Tostado | 356 | 2043.3 | 1975-1985 | |
| 8. | Ed Ostrosser | 350 | 2400.3 | 1979-1990 | |
| 9. | Francis Szabo | 345 | 2298.3 | 1976-1986 | |
| 10. | Mike Madorin | 335 | 3037.3 | 1973-1985 | |
| 11. | Albert Camarena | 329 | 2009.6 | 1984-1994 | |
| 12. | David Lillis | 327 | 2337.9 | 1976-1987 | |
| 13. | Drew Triggs | 326 | 1826.0 | 1980-1991 | |
| 14. | Henry Ellis | 321 | 2374.3 | 1983-1994 | |
| 15. | Todd Adams | 319 | 2268.0 | 1975-1988 | |
| 16. | Al Bowsfield | 318 | 2135.0 | 1982-1994 | |
| 17. | Bill Microsoft | 315 | 1786.3 | 1983-1994 | |
| 18. | Phil Longwell | 293 | 2163.6 | 1982-1994 | |
| 19. | Zachary Sumner | 290 | 2398.9 | 1973-1983 | |
| 20. | Larry Gorton | 288 | 1995.3 | 1973-1982 | |
| 21. | Eric Beckmeyer | 287 | 2111.3 | 1979-1992 | |
| 22. | Hank Davidson | 281 | 1583.9 | 1984-1994 | |
| 23. | Robert Grove | 280 | 2018.3 | 1984-1994 | |
| 24. | Marcel Reyes | 273 | 2479.3 | 1979-1992 | |
| 25. | Ricky Knutsen | 267 | 1853.6 | 1984-1994 | |
| 26. | Lewis Bauder | 263 | 2298.6 | 1980-1993 | |
| Roy Anderson | 263 | 1629.6 | 1976-1987 | ||
| 28. | Frank Rogers | 260 | 2506.3 | 1974-1988 | |
| 29. | Fernando Huertas | 258 | 3950.3 | 1976-1993 | |
| Rodney Lumpkin | 258 | 1807.3 | 1979-1990 | ||
| 31. | Christopher Pump | 257 | 1655.9 | 1976-1992 | |
| Pete Bucher | 257 | 2229.6 | 1973-1984 | ||
| 33. | Gerardo Caputo | 255 | 3121.9 | 1974-1990 | |
| 34. | Junior Gomez | 250 | 2057.0 | 1973-1982 | |
| 35. | Joseph Porter | 249 | 1662.0 | 1974-1982 | |
| 36. | Tim Bombardier | 247 | 2057.3 | 1982-1994 | |
| Larry Trinkle | 247 | 2189.0 | 1976-1989 | ||
| 38. | Tex Avery | 245 | 2488.6 | 1981-1993 | |
| Darius Campbell | 245 | 2688.3 | 1977-1991 | ||
| Don Lombardo | 245 | 1307.3 | 1981-1991 | ||
| 41. | Arky Mooris | 243 | 1829.0 | 1973-1981 | |
| 42. | Bill Walters | 242 | 2567.6 | 1983-1994 | |
| Jackie Varela | 242 | 2448.6 | 1975-1985 | ||
| 44. | Kevin Robinson | 241 | 2871.0 | 1973-1990 | |
| 45. | Rich Meacham | 239 | 1704.6 | 1983-1993 | |
| 46. | Hank Daniels | 238 | 2509.3 | 1984-1994 | |
| Jacinto Merino | 238 | 1653.6 | 1976-1987 | ||
| 48. | Les Straker | 232 | 1702.6 | 1986-1994 | |
| 49. | Gustavo Aranda | 231 | 1605.3 | 1974-1983 | |
| 50. | Dennis Eckersley | 229 | 1767.6 | 1985-1993 | |
| Lorenzo Diaz | 229 | 3266.6 | 1974-1989 | ||
| 52. | Johan Schmatzhagen * | 228 | 2760.7 | 1973-1984 | |
| 53. | Pedro Bilbao | 227 | 2112.3 | 1983-1994 | |
| 54. | Michael Mangual * | 226 | 3711.6 | 1975-1991 | |
| Vernon Meyer | 226 | 2410.6 | 1978-1989 | ||
| 56. | Guy Dall | 223 | 1114.0 | 1985-1993 | |
| Terence Hermanson | 223 | 1624.6 | 1979-1991 | ||
| 58. | Terrence Williams | 220 | 1835.0 | 1976-1984 | |
| 59. | Clyde Mercedes | 218 | 1289.6 | 1982-1989 | |
| 60. | Braggo Franco | 216 | 3375.6 | 1978-1994 | |
| 61. | Bobby Carey | 215 | 1927.0 | 1975-1985 | |
| Bernie Crotchmeyer | 215 | 1705.6 | 1973-1982 | ||
| 63. | Anthony Ball | 214 | 1815.3 | 1973-1981 | |
| Denny Estrada | 214 | 1850.6 | 1973-1980 | ||
| 65. | Harvey Vitiello | 213 | 1830.0 | 1974-1984 | |
| 66. | Darius Widowmaker | 212 | 2188.6 | 1981-1994 | |
| 67. | Mike Powell | 210 | 1168.0 | 1978-1994 | |
| 68. | Washington Jones | 209 | 1761.0 | 1985-1994 | |
| 69. | Floyd Futon | 208 | 2181.9 | 1982-1994 | |
| Ron Vivero | 208 | 2697.0 | 1973-1983 | ||
| 71. | Kevin Bilford | 200 | 1292.3 | 1979-1990 | |
| Roy Hobbs, Jr. * | 200 | 2738.9 | 1973-1982 | ||
| 73. | Kyle Claiborne | 199 | 1300.3 | 1984-1994 | |
| 74. | Greg Alexander | 198 | 1103.3 | 1984-1994 | |
| Chuck Delong | 198 | 2391.6 | 1973-1984 | ||
| 76. | Jamaal Jumboni | 196 | 1939.0 | 1973-1982 | |
| 77. | Emile Yost | 195 | 1196.7 | 1987-1994 | |
| John Mahar | 195 | 1213.3 | 1978-1988 | ||
| 79. | David Clyde | 194 | 1226.3 | 1980-1991 | |
| 80. | Blaine Kinman | 193 | 1480.3 | 1983-1992 | |
| Frank Tanana | 193 | 1422.3 | 1982-1989 | ||
| 82. | Chad Laughlin | 192 | 1057.6 | 1983-1993 | |
| 83. | Kurt Stallwith * | 191 | 2594.6 | 1973-1984 | |
| 84. | Raymond Woodruff | 190 | 1943.3 | 1981-1992 | |
| 85. | Nate Hollins | 189 | 1721.3 | 1985-1994 | |
| Earl Pulver | 189 | 1460.6 | 1974-1985 | ||
| 87. | Albert Ramos | 188 | 1782.3 | 1975-1985 | |
| 88. | Samuel Smith | 186 | 1399.0 | 1987-1994 | |
| Narciso Jarilla | 186 | 1864.3 | 1973-1982 | ||
| 90. | Greg Doonin | 185 | 1199.0 | 1973-1977 | |
| 91. | Ramon Cisneros | 184 | 1182.0 | 1989-1994 | |
| Roland Goodwyn | 184 | 1823.0 | 1974-1986 | ||
| 93. | Denny Wegman | 183 | 2269.0 | 1980-1994 | |
| 94. | Abdal Tutmosa | 182 | 1021.6 | 1985-1994 | |
| 95. | Richie Lake | 181 | 997.0 | 1985-1990 | |
| 96. | Randy Scarbery | 179 | 1607.6 | 1981-1991 | |
| 97. | Julio Guillerma | 178 | 2613.0 | 1973-1983 | |
| 98. | David Chappel | 177 | 1242.0 | 1989-1994 | |
| Justin Alexander * | 177 | 3124.3 | 1976-1992 | ||
| Don Gullett | 177 | 1875.6 | 1979-1990 |
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